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Artificial Neural Network aided Protein Structure Prediction
| International Journal of Computer Applications |
| Foundation of Computer Science (FCS), NY, USA |
| Volume 48 - Number 18 |
| Year of Publication: 2012 |
| Authors: Arundhati Deka, Kandarpa Kr. Sarma |
10.5120/7450-0494
|
Arundhati Deka, Kandarpa Kr. Sarma . Artificial Neural Network aided Protein Structure Prediction. International Journal of Computer Applications. 48, 18 ( June 2012), 33-37. DOI=10.5120/7450-0494
Abstract
Protein structure prediction plays a vital role in drug design and biotechnology. Understanding protein structures is necessary to determine the function of a protein and its interaction with DNA, RNA and Enzymes. Experimental techniques such as NMR Spectroscopy and X-ray Crystallography have been the main source of information about protein structures. But these conventional methods are now replaced by Machine learning methods such as Artificial Neural Network (ANN) and Support Vector Machine (SVM)s. In this paper, ANNs are used as a two level classifier to estimate the tertiary structure of proteins. ANNs are trained to make them capable of recognizing the primary sequences and DSSP codes of protein structures and their association with the secondary structure is derived. Based on majority selection, the final secondary structure is evaluated. These secondary structures can be further used as inputs to classify between the basic tertiary folds and subclasses of tertiary folds.
References
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- H. Bordoloi and K. K. Sarma, ``Protein Structure Prediction using Artificial Neural Network'', IJCA Special Issue on Electronics, Information and Communication Engineering ICEICE (3), pp. 24-26, December 2011. Published by Foundation of Computer Science, New York, USA.
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