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New Distance Measure for Sequence Comparison using Cumulative Frequency Distribution

by Meera.A, Lalitha Rangarajan, Shilpa .N
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International Journal of Computer Applications
Foundation of Computer Science (FCS), NY, USA
Volume 19 - Number 2
Year of Publication: 2011
Authors: Meera.A, Lalitha Rangarajan, Shilpa .N
10.5120/2335-3043

Meera.A, Lalitha Rangarajan, Shilpa .N . New Distance Measure for Sequence Comparison using Cumulative Frequency Distribution. International Journal of Computer Applications. 19, 2 ( April 2011), 13-18. DOI=10.5120/2335-3043

@article{ 10.5120/2335-3043,
author = { Meera.A, Lalitha Rangarajan, Shilpa .N },
title = { New Distance Measure for Sequence Comparison using Cumulative Frequency Distribution },
journal = { International Journal of Computer Applications },
issue_date = { April 2011 },
volume = { 19 },
number = { 2 },
month = { April },
year = { 2011 },
issn = { 0975-8887 },
pages = { 13-18 },
numpages = {9},
url = { https://ijcaonline.org/archives/volume19/number2/2335-3043/ },
doi = { 10.5120/2335-3043 },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Journal Article
%1 2024-02-06T20:05:56.503619+05:30
%A Meera.A
%A Lalitha Rangarajan
%A Shilpa .N
%T New Distance Measure for Sequence Comparison using Cumulative Frequency Distribution
%J International Journal of Computer Applications
%@ 0975-8887
%V 19
%N 2
%P 13-18
%D 2011
%I Foundation of Computer Science (FCS), NY, USA
Abstract

Comparison of two promoter sequences is proposed in this paper. Motifs are extracted from promoter sequences using available software tool ‘TF SEARCH’. The promoter sequences are compared using cumulative frequency distribution of motifs. For experimental study, promoter sequences of different mammals of the enzyme Citrate synthase of TCA (kreb) cycle in CMP (Central Metabolic Pathway) are considered. Results reveal high similarity in motif sequences of different organisms in the same chromosome. Also some amount of similarity is present among motif sequences of different chromosomes of the same organism.

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Index Terms

Computer Science
Information Sciences

Keywords

Cumulative frequency distribution Distance measure Pattern matching Promoter sequence Regression line Transcription Factors (TFs) Transcription factor binding sites (TFBS)

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