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Reseach Article

Spiral Bacterial Cell Image Analysis using Active Contour Method

by P.S. Hiremath, Parashuram Bannigidad
International Journal of Computer Applications
Foundation of Computer Science (FCS), NY, USA
Volume 37 - Number 8
Year of Publication: 2012
Authors: P.S. Hiremath, Parashuram Bannigidad
10.5120/4626-6650

P.S. Hiremath, Parashuram Bannigidad . Spiral Bacterial Cell Image Analysis using Active Contour Method. International Journal of Computer Applications. 37, 8 ( January 2012), 5-9. DOI=10.5120/4626-6650

@article{ 10.5120/4626-6650,
author = { P.S. Hiremath, Parashuram Bannigidad },
title = { Spiral Bacterial Cell Image Analysis using Active Contour Method },
journal = { International Journal of Computer Applications },
issue_date = { January 2012 },
volume = { 37 },
number = { 8 },
month = { January },
year = { 2012 },
issn = { 0975-8887 },
pages = { 5-9 },
numpages = {9},
url = { https://ijcaonline.org/archives/volume37/number8/4626-6650/ },
doi = { 10.5120/4626-6650 },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Journal Article
%1 2024-02-06T20:23:46.385589+05:30
%A P.S. Hiremath
%A Parashuram Bannigidad
%T Spiral Bacterial Cell Image Analysis using Active Contour Method
%J International Journal of Computer Applications
%@ 0975-8887
%V 37
%N 8
%P 5-9
%D 2012
%I Foundation of Computer Science (FCS), NY, USA
Abstract

Image segmentation is a fundamental task in image analysis responsible for partitioning an image into multiple sub-regions based on a desired feature. Active contours have been widely used as attractive image segmentation methods because they always produce sub-regions with continuous boundaries, while the kernel-based edge detection methods, e.g. Sobel edge detectors, often produce discontinuous boundaries. The objective of the present study is to develop an automatic tool to identify and classify the different types of spiral bacterial cells in digital microscopic cell images using active contour method. Geometric features are used to identify the arrangement of spiral bacterial cells, namely, vibrio, spirillum and spirochete. The current methods rely on the subjective reading of profiles by a human expert based on the various manual staining methods. In this paper, we propose a method for bacterial classification by segmenting digital spiral bacterial cell images and extracting only three geometric features for cell classification using different classifiers, namely, 3s classifier, K-NN classifier, Neural Network classifier and Neuro Fuzzy classifiers. The experimental results are compared with the manual results obtained by the microbiology expert and demonstrate the efficacy of the proposed method.

References
  1. Aneja, K. R. (2002). Experiments in Microbiology Plant Pathology Tissue Culture and Mushroom Culture, Newage International Publications, New Delhi, India.
  2. Carolina, W., Joakim, L., Mikael, V., Ewert, B. and Lennart, B., Algorithms for Cytoplasm Segmentation of Fluorescence Labeled Cells, Analytical Cellular Pathology, Vol.24, 2002, pp.101-111.
  3. Obtained through the Internet www.cellbank.nibio.go, http://denniskunkel.com/DK/Bacteria/en.academic.ru/dic.nsf/enwiki/76356,
  4. Hiremath P. S. and Parashuram Bannigidad, Automatic Identification and Classification of Cocci Bacterial Cells using Digital Microscopic Images, Int’l. J. on computational Biology and Drug Design (IJCBDD), Inderscience Publishers Ltd. USA, Vol. 4, No. 3, pp. 262-273, 2011.
  5. Tony F Chan, Luminita A. Vese, Active Contours Without Edges, IEEE Transaction on Image Processing, Vol. 10, No. 2, February 2001.
  6. Michael Kass, Andrew witkin and demetri, Snakes : Active contour models, Intl. J. of Computer Vision, 1998, pp. 321-331.
  7. Liu, J. F.B. Dazzo, O. Glagovela, B. Yu, A.K. Jain, CMEIAS: A Computer-Aided System for the Image Analysis of Bacterial Morphotypes in Microbial Communities, Springer-Verlag, Microb. Ecol. Vol.41, 2001, pp. 173-194.
  8. Jeffrey C. Pommerville (2010) Alcamo’s Fundamentals of Microbiology Body Systems Edition, Jones and Bartlett Publishers, USA.
  9. Nicholas, B., Åke, H., Johan, W., Rocio, C-H. and Peter, K.B., Rapid Determination of Bacterial Abundance, Biovolume, Morphology, and Growth by Neural Network-Based Image analysis, Applied and Environmental Microbiology, Vol.64(9), 1998, pp.3246-3255.
  10. Pattan Prakash C., V.D. Mytri and P.S. Hiremath. (2010) Classification of Cast Iron Based Graphite Grain Morphology using Neural Network Approach, 2nd International Conference on Digital Image Processing (ICDIP-2010), Proc. of SPIE Vol. 7546-53, Feb. 26-28, 2010, Singapore, pp. 75462S-1-6.
  11. Petra Perner, Classification of HEp-2 Cells using Fluorescent Image Analysis and Data Mining, Medical Data Analysis, Springer Verlag, LNCS Vol.2199, 2001, pp.219-224.
  12. Rafael C. Gonzalez and Richard E. Woods (2002). Digital Image Processing, Pearson Education Asia, India.
  13. Sigal Trattner and Greenspan H, Automatic Identification of Bacterial Types Using Statistical Imaging Methods, IEEE Transactions on Medical Imaging, Vol.23(7), 2004, pp.807-820.
  14. Thomas, P., Josef, F., Martin, P. and Michaela, M.S. (2009) New Image Analysis Tool to Study Biomass and Morphotypes of Three Major Bacterioplankton Groups in an Alpine Lake, Acuatic Microbiol Ecology, Vol.54: pp. 113-126.
  15. Venkataraman, S., Allison, D.P., Qi, H., Morrell-Falvey, J.L., Kallewaard, N.L., Crowe Jr., J.E.and Doktycz, M.J. (2006) Automated Image Analysis of Atomic Microscopy Images of Rotavirus Particles, Ultramicroscopy, Elsevier, Vol. 106, 2006, pp. 829-837.
  16. Pekka Ruusuvuori, Jenni Seppaal, Timo Erkkil, Antti Lehmussola, Jaakko A. Puhakka and Olli Yli-Harja, Efficient Automated Method for Image-based Classification of Microbial Cells, Proc. of the IEEE 19th Int’l. Conf. on Pattern Recognition, (ICPR 2008), Tampa, Florida, USA, 7-11 December 2008, pp. 1-4.
  17. John C. Russ, The Image Processing Hand Book, (2007), 5th Ed. CRC Press, New Jersey.
  18. Evangelia Micheli-Tzanakou (2000) Supervised and Unsupervised Pattern Recognition – Feature Extraction and Computational Intelligence, CRC Press LLC, Florida.
  19. Hiremath P.S. and Parashuram Bannigidad, Digital Microscopic Image Analysis of Spiral Bacterial Cell Groups, Int’l. Conf. on Intelligent Systems and Data Processing (ICISD-2011), Gujarat, Jan. 24-25th, 2011, pp. 209-213.
  20. Chenyang Xu, Jerry L Prince, Snakes , Shapes, and Gradient Vector Flow, IEEE Transactions on Image Processing, Vol. 7, No. 3, March 1998.
Index Terms

Computer Science
Information Sciences

Keywords

Cell segmentation bacterial image analysis vibrio spirillum spirochete 3s classifier K-NN classifier Neural Network classifier Neuro Fuzzy classifier Active Contour Method