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Reseach Article

Large-Scale of Metabolic Network of E. Coli using MATLAB

Published on December 2014 by Kunna Mohamed, Tuty Kadir, Elrasheed I. Sultan
Majan College International Conference
Foundation of Computer Science USA
MIC - Number 1
December 2014
Authors: Kunna Mohamed, Tuty Kadir, Elrasheed I. Sultan
367657cb-a1f3-47a0-9e95-bd68d5e5b62a

Kunna Mohamed, Tuty Kadir, Elrasheed I. Sultan . Large-Scale of Metabolic Network of E. Coli using MATLAB. Majan College International Conference. MIC, 1 (December 2014), 22-26.

@article{
author = { Kunna Mohamed, Tuty Kadir, Elrasheed I. Sultan },
title = { Large-Scale of Metabolic Network of E. Coli using MATLAB },
journal = { Majan College International Conference },
issue_date = { December 2014 },
volume = { MIC },
number = { 1 },
month = { December },
year = { 2014 },
issn = 0975-8887,
pages = { 22-26 },
numpages = 5,
url = { /proceedings/mic/number1/19033-1410/ },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Proceeding Article
%1 Majan College International Conference
%A Kunna Mohamed
%A Tuty Kadir
%A Elrasheed I. Sultan
%T Large-Scale of Metabolic Network of E. Coli using MATLAB
%J Majan College International Conference
%@ 0975-8887
%V MIC
%N 1
%P 22-26
%D 2014
%I International Journal of Computer Applications
Abstract

In this study, we performed local sensitivity analysis on a large-scale kinetic dynamic metabolic network. Time profile for sensitivity indices has been calculated for each kinetic parameters based on highest variance. The dynamic model of E. coli used in this study contain Glycolysis, Pentose Phosphate, TCA cycle, Gluconeogenesis and Glycoxylate pathways in addition to Acetate formation PTS system. The model implicates twenty-four dynamic mass balance for extracellular glucose and intracellular, thirty kinetic rate expressions. We test all the kinetics in 10% and 20 % increasing one by one at steady state condition. The former analysis in 20%, has allowed identification of eight kinetic parameters as the most effective on this model.

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Index Terms

Computer Science
Information Sciences

Keywords

Metabolic Network Dynamic Modeling Sensitivity Analysis.