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Reseach Article

Residue Contact Prediction for Protein Structure using 2-Norm Distances

Published on March 2012 by Nikita V. Mahajan, L.G.Malik
2nd National Conference on Innovative Paradigms in Engineering and Technology (NCIPET 2013)
Foundation of Computer Science USA
NCIPET - Number 11
March 2012
Authors: Nikita V. Mahajan, L.G.Malik
e1b7f37d-fc07-4d69-a4e2-390463c0a58f

Nikita V. Mahajan, L.G.Malik . Residue Contact Prediction for Protein Structure using 2-Norm Distances. 2nd National Conference on Innovative Paradigms in Engineering and Technology (NCIPET 2013). NCIPET, 11 (March 2012), 17-21.

@article{
author = { Nikita V. Mahajan, L.G.Malik },
title = { Residue Contact Prediction for Protein Structure using 2-Norm Distances },
journal = { 2nd National Conference on Innovative Paradigms in Engineering and Technology (NCIPET 2013) },
issue_date = { March 2012 },
volume = { NCIPET },
number = { 11 },
month = { March },
year = { 2012 },
issn = 0975-8887,
pages = { 17-21 },
numpages = 5,
url = { /proceedings/ncipet/number11/5272-1084/ },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Proceeding Article
%1 2nd National Conference on Innovative Paradigms in Engineering and Technology (NCIPET 2013)
%A Nikita V. Mahajan
%A L.G.Malik
%T Residue Contact Prediction for Protein Structure using 2-Norm Distances
%J 2nd National Conference on Innovative Paradigms in Engineering and Technology (NCIPET 2013)
%@ 0975-8887
%V NCIPET
%N 11
%P 17-21
%D 2012
%I International Journal of Computer Applications
Abstract

Bioinformatics is a field which uses technology and is rapidly growing, to solve the problem related to biological area. Study of protein, predicting its structure to know its function is an important field in bioinformatics. Protein unit that is twenty amino acids have total information for converting linear sequences of amino acid into its unique and globular structures. Protein folding problem is process to determine that protein is folding into its exact tertiary structure. Protein folds into matter of seconds to its stable 3-D structure; once it is stable it may perform proper functions. Contact map is an intermediate step for converting 1-d structure to 3-d structure. Contact map is the representative graphical view, how the protein folds into its proper structure. Here, 6 parameters are set, which consider 2-norm distances for generating the contact map. It will consider the co-ordinate data, only of the residue having alpha carbon as contact type and map the contact as 1 if differences is greater than threshold value or -1 if less than threshold value.

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Index Terms

Computer Science
Information Sciences

Keywords

Protein Structure Prediction Amino Acids Contact Map Non- local Contact Map 2-Norm Distances