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FUNGID: A Web-based Identification Program for Phytophthora

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International Journal of Computer Applications
© 2012 by IJCA Journal
Volume 50 - Number 2
Year of Publication: 2012
Authors:
Ali Chenari Bouket
Mahdi Arzanlou
Asad Babai-ahari
Amin Khodabande
10.5120/7741-0793

Ali Chenari Bouket, Mahdi Arzanlou, Asad Babai-ahari and Amin Khodabande. Article: FUNGID: A Web-based Identification Program for Phytophthora. International Journal of Computer Applications 50(2):10-18, July 2012. Full text available. BibTeX

@article{key:article,
	author = {Ali Chenari Bouket and Mahdi Arzanlou and Asad Babai-ahari and Amin Khodabande},
	title = {Article: FUNGID: A Web-based Identification Program for Phytophthora},
	journal = {International Journal of Computer Applications},
	year = {2012},
	volume = {50},
	number = {2},
	pages = {10-18},
	month = {July},
	note = {Full text available}
}

Abstract

The genus Phytophthora encompasses economically important plant pathogens. To date, up to 90 species have been described in this genus. There is no comprehensive key available for the identification of the all described Phytophthora species. This paper, describes a web-based identification tool (which has been described by the authors under the name of Fungid) that uses morphologic features. The characters used are the same as the synoptic keys of Gerrettson-Cornell (1994) and Ho (1981) [1, 2]. For the isolate in question, the software compares the unknown isolate with more than 40 known species submitted in the database. One or more than one species is suggested to the user by the software. For some of the species, additional data such as images of the species, links to other databases like that Q-bank, Index fungorum is presented.

References

  • Gerrettson-cornell, L. (Eds. ). 1994. A compendium and classification of the species of the genus Phytophthora de Bary by the canons of the traditional taxonomy. Research division, State forests of new South Wales, Sydney.
  • Ho, H. H. 1981. Synoptic keys to the species of Phytophthora. Mycologia. 73(4): 705-714.
  • Diederich, J, Fortuner, R and Milton, J. 2000. Genysis and computer-assisted identification of nematodes. Nematology. 2: 17-30.
  • Taylor, J. W, Jacobson, D. J, Kroken, S. , Kasuga, T, Geiser, D. M, Hibbett, D. S and Fisher, M. C. 2000. Phylogenetic species recognition and species concepts in Fungi. Fung. Gen. Biol. 31, 21-32.
  • Luc, M, Doucet, M. E, Fortuner, R, Castillo, P, Decraemer, W and Lax P. 2010. Usefulness of morphological data for the study of nematode biodiversity. Nematology. 12: 495-504.
  • Fortuner, R. 2002. Uniformity and representation of taxonomic and other characters and semi-automatic extraction using computer tools. Nematology. 4: 583-591.
  • Ellis, M. B. 1971. Dematiacious Hyphomycetes. CABI, Kew, UK.
  • Ellis, M. B. 1976. More Dematiacious Hyphomycetes. CABI, Kew, UK.
  • Sutton, B. C. 1980. The Coelomycetes. Fungi imperfecti with pycnidia, acervuli and stromata. CABI, Kew, UK.
  • Hanlin, R. T. 1990. Illustrated genera of Ascomycetes. APS Press. St Paul, USA.
  • Branett, H. L and Hunter, B. B. 1998. Illustrated genera of imperfect fungi. APS Press, St Paul, USA.
  • Neilson, H. F and Stewart, T. M. 2003. A multi-access lucid key to common plant pathogenic fungi causing diseases of temperate crops. New Zeal. Plant Protect. 56, 100-102.
  • Michaelides, J, Hunter, L, Kendrick B and Nag Raj, T. R. 1979. Synoptic key to 200 genera of Coelomycetes. University of Waterloo Biology Series 20. University of Waterloo, Canada.
  • Korf, R. P and Zhuang WY. 1985. A synoptic key to the species of Lambertella (Sclerotiniaceae) with comments on a version prepared for TAXADAT, Anderegg's computer program. Mycotaxon. 24: 361-386.
  • Polonelli, L, Gastagnola, M, Rossetti, D. V and Morace, G. 1985. Use of killer toxins for computer-aided differentiation of candida albicans strains. Mycopathologia. 91: 175-179.
  • Pitt, J. I. 1990. PENAME, a computer key to common Penicillium species. CSIRO Division of Food Processing, North Ryde, NSW.
  • Thrane, U. 1991. FUSKEY, an interactive computer key to common Fusarium species. Proc. 2nd European Fusarium Seminar, 5-7 Sept. 1990, Poznan Poland.
  • Bridge, P. D, Kozakiewicz, Z and Paterson, R. R. M. 1992. PENIMAT, a computer-assisted identification scheme for terverticillate Penicillium isolates. Mycol. Pap. 165: 1-59.
  • Sarma, V. V, Raghukumar, S, Hyde, K. D, Vittal, B. P. R and Chandramohan, D. 2000. A CD-ROM for documentation and identification of mangrove fungi. In: Hyde KD, Ho WH & Pointing SB. (eds. ), Aquatic Mycology across the Millennium, Fung. Divers. 5. pp. 195-200.
  • Varese, G. C, Anastasi, A, Voyron, S and Marchisio, V. F. 2010. An interactive tool for the identification of airborne and food fungi. In: Nimis PL, Vignes Lebbe R. (eds. ), Tools for identifying biodiversity: progress and problems. Pp. 183-187. University of Torino, Italy.
  • Tardivel, G. M and Morse, D. R. 1998. The role of the user in computer based species identification. In: Bridge P, Jeffries P, Morse DR, Scott PR (eds. ), Information technology, plant pathology and biodiversity. pp. 247-259. Wallingford, UK, CAB International.
  • Tiefenbrunner, A, Tiefenbrunner, M, Tiefenbrunner, W and Wahra, A. 2002. A software tool as an aid to the identification of species of Longidorus Micoletzkey, 1922 (Nematoda: Dorylaimoidea), Nematology. 4: 845-852.
  • Agrios, G. N. 2005. Plant Pathology. 5th ed. Elsevier Academic Press.
  • Rosenbaum, J. 1917. Studies of the genus Phytophthora. J. Agric. Res. 8: 233-276.
  • Leonian, L. H. 1925. Physiological studies on the genus Phytophthora. Amer. J. Bot. 12: 444-498.
  • Tucker, C. M. 1931. Taxonomy of the genus Phytophthora de Bary. Research Bulletin 153, University of Missouri.
  • Leonian, L. H. 1934. Identification of Phytophthora species. Research Bulletin 262, University of West-Virginia.
  • Sarejanni, J. A. 1936. La pourriture du collet des solanees cultivees et la classification du genre Phytophthora. Ann. Inst. Phytopath. Benaki, N. S. 2: 35-51.
  • Frezzi, M. J. 1950. Las especies de Phytophthora en la Argentina. Rev. Invest. Agr. 4: 47-134.
  • Waterhouse, G. M and Blackwell, E. M. 1954. Key to the species of Phytophthora recorded in the British Isles. Mycol. Pap. 57.
  • Waterhouse, G. M. 1963. Key to the species of Phytophthora de Bary. Mycol. Pap. 92.
  • Newhook, F. J, Waterhouse, G. M and Stamps DJ. 1978. Tabular key to the species of Phytophthora de Bary. Mycol. Pap. 143.
  • Fogel, R. 1998. Use of the Internet to revive fortunes in Mycology: the MICH experience. Mycologist. 12(2): 62-65.
  • Fries, E. M, 1821. Systema Mycologicum I. Lund.
  • Hawksworth, D. L, 1974. Mycologist's Handbook Kew: CMI.
  • Fortuner, R. 1989. Nematode identification and export system technology. New York, NY, Plenum Publishing Corp, US.
  • Cheeseman_Day, J, Janus, A and Davis, J. 2005. Computer use and internet use in the United States: 2003 in special studies. US Census Bureau, Washington, D. C.