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Reseach Article

Codon Characterization based on Electrical Response

Published on December 2015 by Monalisa Dutta, and Soma Barman
International Conference on Microelectronic Circuit and System
Foundation of Computer Science USA
MICRO2015 - Number 1
December 2015
Authors: Monalisa Dutta, and Soma Barman
71755eb3-0ed3-4fa0-a6fa-5c39dc14294a

Monalisa Dutta, and Soma Barman . Codon Characterization based on Electrical Response. International Conference on Microelectronic Circuit and System. MICRO2015, 1 (December 2015), 24-30.

@article{
author = { Monalisa Dutta, and Soma Barman },
title = { Codon Characterization based on Electrical Response },
journal = { International Conference on Microelectronic Circuit and System },
issue_date = { December 2015 },
volume = { MICRO2015 },
number = { 1 },
month = { December },
year = { 2015 },
issn = 0975-8887,
pages = { 24-30 },
numpages = 7,
url = { /proceedings/micro2015/number1/23702-1739/ },
publisher = {Foundation of Computer Science (FCS), NY, USA},
address = {New York, USA}
}
%0 Proceeding Article
%1 International Conference on Microelectronic Circuit and System
%A Monalisa Dutta
%A and Soma Barman
%T Codon Characterization based on Electrical Response
%J International Conference on Microelectronic Circuit and System
%@ 0975-8887
%V MICRO2015
%N 1
%P 24-30
%D 2015
%I International Journal of Computer Applications
Abstract

significant research topic in recent years. Codon is an important element in DNA sequence which is responsible for formation of protein in genes. 64 codons of genes are modeled using MOSFET from elementary level and characterized them based on purine and pyrimidine property. The model is realized in Spice domain and a new genetic code classification table is described based on simulated transient voltage and current responses of purine and pyrimidine bases. The effect of base position is investigated using frequency domain analysis of voltage and phase characteristics of codon electrical circuit.

References
  1. J. D. Watson and F. H. C. Crick, "A structure for DNA", Nature, 1953.
  2. Gullu, O. et al. "DNA-based organic-on-inorganic devices: Barrier enhancement and temperature issues, " Microelectronic Engineering Vol. 85, Issue 11, 2250-2255, 2008.
  3. Nanjundiah, Vidyanand, "George Gamow and the genetic code," Resonance-Journal of Science Education , vol. 9, issue 7, 44-49, 2004Tavel, 2007 Modeling and Simulation Design. AK Peters Ltd.
  4. Collins, S. Francis. et al. "A vision for the future of genomics research", Nature, vol. 422, 835-847.
  5. Danny Porath, Gianaurelio Cuniberti, and Rosa Di Felice. "Charge transport in DNA-based devices", Long-Range Charge Transfer in DNA II, Springer Berlin Heidelberg, vol. 237, 183-228, 2004.
  6. Heath, James R. , and Mark A. "Molecular electronics", Physics Today, vol. 56, issue 5, 43-49, 2003.
  7. Lu. Shun, "Conductivity measurements of single DNA molecules using conductive-atomic force microscopy", Diss. Department of Physics-Simon Fraser University, 2006.
  8. Jiaxiong Wang, "Electrical conductivity of double stranded DNA measured with ac impedance spectroscopy", Physical Review, B 78, 2008.
  9. Zdravko Kutnjak, et al. "Electrical conduction in macroscopically oriented deoxyribonucleic and hyaluronic acid samples", Physical Review, vol. 71. Issue 4, 2005.
  10. Johan Lagerqvist, Michael Zwolak, and Massimiliano Di Ventra. "Fast DNA sequencing via transverse electronic transport", Nano Letters , vol. 6, Issue 4 ,779-782.
  11. R. Marshall "Modeling DNA/RNA strings using resistor—capacitor (rc) ladder networks", The Computer Journal , vol. 53, issue 6, 644-660, 2010.
  12. Kunming Xu "DNA Circuit System and Charge Transfer Mechanism,"Engineering Vol. 5,No. 10,DOI: 10. 4236/eng. 2013. 510B077, 2003.
  13. Vedrana. Hodzic, Vildana Hodzic and Robart W. Newcomb, " Modelling of electrical conductivity of DNA", vol. 54,No. 11, pp. 2360-2364, 2007.
  14. N. V. Grib, J. A. Berashevich, and V. E. Borisenko,"Equivalent electrical network of the DNA molecule", Russian Microelectronics, Vol. 35, issue 6,398-404, 2006.
  15. Jacob Ben, E. , Z. Hermon, and S. Caspi. "DNA transistor and quantum bit element: realization of nano-biomolecular logical devices," Physics Letters A, Vol. 263, Issue 3,199-202.
  16. Muniza Zahid, et al. "DNA nanotechnology: a future perspective", Nanoscale research letters, Vol. 8, No. 1, 1-13, 2003.
  17. P. P. Vaidyanathan, "Genomics and proteomics: a signal processor's tour", IEEE Circuits Syst. Mag. 4,6–29, 2004.
  18. Thomas M. Devlin, "Text Book of Biochemistry with Clinical Correlations", Wiley, 24-63, ISBN: 978-0-471-67808-3,2013.
  19. R. Jacob Baker," CMOS circuit Design and layout and simulation", Wiley, third edition, ISBN: 978-1-118-03823-9,2011.
  20. Tony Chan Carusone, David A. Johns, Kenneth W. Martin, " Analog integrated circuit design", Wiley, Second Edition, ISBN:978-0-470-77010-8.
Index Terms

Computer Science
Information Sciences

Keywords

Codon Dna Nucleotides Electrical Model Mosfet.