Call for Paper - July 2019 Edition
IJCA solicits original research papers for the July 2019 Edition. Last date of manuscript submission is June 20, 2019. Read More

Information Extraction for Biological and Biomedical Literature: A Review

Print
PDF
IJCA Proceedings on National Conference cum Workshop on Bioinformatics and Computational Biology
© 2014 by IJCA Journal
NCWBCB - Number 1
Year of Publication: 2014
Authors:
Purabi Kalita
Rashmi Choudhury

Purabi Kalita and Rashmi Choudhury. Article: Information Extraction for Biological and Biomedical Literature: A Review. IJCA Proceedings on National Conference cum Workshop on Bioinformatics and Computational Biology NCWBCB(1):7-10, May 2014. Full text available. BibTeX

@article{key:article,
	author = {Purabi Kalita and Rashmi Choudhury},
	title = {Article: Information Extraction for Biological and Biomedical Literature: A Review},
	journal = {IJCA Proceedings on National Conference cum Workshop on Bioinformatics and Computational Biology},
	year = {2014},
	volume = {NCWBCB},
	number = {1},
	pages = {7-10},
	month = {May},
	note = {Full text available}
}

Abstract

Information Extraction is a technique whose importance in this era of information and technology is growing rapidly. It is nothing but a process of scanning text for information relevant to some interests like extracting entities, relations and events. Likewise all other fields, Bioinformatics also depends on information processing. The information available in Biomedical and other Biological researches need to be automated to make them reachable easily. For this, the textual information available is extracted to relational form. There are various researchers working on this field. Most of them are dealing with information extraction for protein interaction, DNA expression arrays etc. The main aim of this review paper is to study different research papers on IE for Biology and about their method of extracting biomedical or biological literature.

References

  • Libbus, Thomas C. Rindflesch, "NLP-Based Information Extraction for Managing the Molecular Biology Literature", AMIA 2002 Annual Symposium Proceedings
  • Ronen Feldman, Yizhar Regev, Michal Finkelstein Landau, Eyal Hurvitz, Boris Kogan, "Mining Biomedical Literature using Information Extraction", ClearForest Corp, USA, Israel, October 2002.
  • Latha. K, Kalimuthu. S, Dr. Rajaram. R, "Information Extraction from Biomedical Literature using Text Mining Framework", International Journal of Imaging Science and Engineering, GA, USA, ISSN: 1934-9955, VOL. 1, NO. 1, January 2007.
  • Christian Blaschke, Lynette Hirschman, Alfonso Valencia, "Information Extraction in Molecular Biology", Henry Steward Publication, 1467-5463, Briefings In Bioinformatics, VOL. 3,NO. 2, 1544-165, JUNE 2002.
  • Tatsuhiko Tsunoda, Limsoon Wong, "Natural Language Processing for Biology", Pacific Symposium on Biocomputing 5:488-489 (2000).
  • K. Bretonnel Cohen and Lawrence Hunter, "Natural Language Processing and Systems Biology", http://compbio. ucdenver. edu/.
  • S. Mukherjea, L. V. Subramanian, G. Chanda, S. Sankararaman, R. Kothari, V. Batra, D. Bhardwaj, B. Srivastava," Enhancing a biomedical information extraction system with dictionary mining and context disambiguation", IBM J. RES. & DEV. VOL. 48 NO. 5/6 September/November 2004.
  • L. Hirshman, J. C. Park, J. Tsujii, L. Wong, and C. H. Wu, "Accomplishments and Challenges in Literature Data Mining for Biology," BioInform. Rev. 18, No. 12, 1553–1561 (2002).
  • UMLS; see http://umlsks. nlm. nih. gov/.
  • R. Gaizauskas, G. Demetriou, P. J. Artymiuk and P. Willett, "Protein Structures and Information Extraction from Biological Texts: The PASTA System", Oxford University Press, vol. 19 no. 1, pages 135-143, February 15 2014.
  • Jerry R. Hobbs, "Information Extraction from biomedical text", Journal of Biomedical Informatics-Special Issue, vol. 35, Issue 4, pages 260-264, August 2002.
  • Aaron M. Cohen, William R. Hersh, "A survey of current work in biomedical text mining", HENRY STEWART PUBLICATION, vol. 6, no. 1, pages 57-71, March 2005.